Welcome to GiraffeTools!
What is GiraffeTools?
Documentation
0. Setup
Getting started with GiraffeTools
Setting up a new GiraffeTools project
1. Basics
The workflow editor & node menu
How to use the workflow editor
The parameter editor
How to use the parameter editor
The code editor
How to use the code editor
Creating, saving, loading, and exporting your pipeline
How to create, save, load, and export (images of your) Porcupine pipelines
Using Dockerfiles
How build and use Porcupine-generated Dockerfiles
2. Nipype-pipelines
Nipype in Porcupine
Introduction to generating Nipype code using Porcupine
Reading and writing files with Nipype
File I/O in Porcupine using the SelectFiles and DataSink
Manually adding ports
How to mimick Nipype’s dynamic ports using manually added ports
Iterables and MapNodes in Nipype-based pipelines
How to implement iterables and MapNodes in Nipype-pipelines in Porcupine
3. Advanced usage
Using custom Nipype-nodes in Porcupine
How to convert and load custom Nipype-nodes
Add your own workflow to our gallery
How to contribute to our piggy bank of .pork files
Make a BIDS app from your Dockerfile
How to convert your pipeline into a BIDS App
4. Developers
Developer’s Guide
For developers that want to extend Porcupine
The source files
Generator specific C++ header and source files
Load your generator into Porcupine
Register your generator in the CodeEditor
Code editor layout
Change layout and add syntax highlighting in your code